Database-linked feature summary

HANSEN Statistics

A database-wide summary of structural coverage and annotation layers across the Mycobacterium leprae proteome, spanning model records by method, oligomeric states, ligand annotations, pocket predictions, confidence distributions and B-cell epitope features.

Counting Rules. Model counts use HANSEN database records. DiscoTope3/B-cell epitope propensity is scoped to AF3 and Boltz2.
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Overview

Core Database Summary

High-level counts separated from method-specific database model records. Click “View Details” below each number to inspect, filter and download the underlying table.

Unique ML IDs

1,603

Protein_Table.xlsx
Database Model Records

7,122

registered models only
Monomer Records

6,396

single-chain models
Oligomer Records

726

multi-chain models
Liganded Records

365

ligand metadata detected
Mean pLDDT

83.4

CIF B-factor derived
AF3

1,625

Boltz2

2,303

Boltz

1,599

Chai

1,595

PAE Assignments

2,212

Confidence Assignments

2,167

Coverage and Composition

Feature Availability and Model Classes

Coverage is separated from biological or structural interpretation to avoid over-reading missing annotation layers.

Feature Completeness

Model-level and protein-level feature coverage. Protein-level denominators use Protein_Table.xlsx.

coverage

Model Yield by Method

Database-linked model records only.

models

Oligomer n-mer Classes

Chain-count classes among database model records.

assembly

Liganded Fraction by Method

Percentage of model records with ligand metadata.

ligands

Pocket Scores by Priority

High-priority target group compared with other proteins.

pockets

B-cell Epitope Propensity

Residue-level DiscoTope3 statistics for AF3 and Boltz2 only.

AF3/Boltz2
Boltz and Chai are not shown as zero values because DiscoTope3 was not run for those methods.
Model Quality

pLDDT and PAE Distributions

Distribution plots show model-level spread rather than only headline averages.

pLDDT Distribution

Violin/box distribution derived from CIF B-factors.

confidence

PAE Distribution

Model-level mean PAE from linked JSON files.

error

pLDDT Model-Level Strip Plot

Individual model records by method.

points

PAE Model-Level Strip Plot

Individual model records by method.

points
Advanced Comparisons

Effect Sizes, Associations and Correlations

These tables provide statistical context for comparing model methods and downstream annotation layers.

Pairwise Method Effect Sizes

Cliff’s delta compares method distributions. Positive values mean the first method tends to have higher values.

MetricComparisonDeltaEffectnMedians

Associations and Correlations

Cramér’s V summarises categorical associations; Spearman rho summarises protein-level rank relationships.

ComparisonStatisticValuen / Shape
Per-Protein Table

Integrated Coverage by ML ID

Searchable protein-level summary combining model availability, quality, pockets, epitope propensity, target priority and essentiality.

ML IDGeneProteinModelsMethodsAssembliesn-merLigandedpLDDTPAEAF2BindP2RankF-PocketDiscoTope3TargetEssentiality
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Diagnostics and Provenance

Use this section to verify cache age, counting rules, detected files and annotation mappings.

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