2026-06-13 12:26:34	1m 31s	cheesy_kowalevski	OK	087ada567e12d1198d6e5e7d7393878a	b373c377-6159-4bdf-8582-356f9ca9db64	nextflow run /data/new-hansen/lep_amr/wf-amplicon-local-v1 -profile standard -resume --fastq /data/new-hansen/lep_amr/runs/20260613_122631_02b071fd/work/input_fastq --reference /data/new-hansen/lep_amr/runs/20260613_122631_02b071fd/work/screening/selected_amplicons.fasta --sample_sheet /data/new-hansen/lep_amr/runs/20260613_122631_02b071fd/work/sample_sheet.csv --out_dir /data/new-hansen/lep_amr/runs/20260613_122631_02b071fd/work/epi2me_output --reads_downsampling_size 0 --min_read_length 80 --drop_frac_longest_reads 0 --take_longest_remaining_reads false --min_coverage 20 --threads 4 --override_basecaller_cfg dna_r10.4.1_e8.2_400bps_hac@v4.2.0
