# Nextflow workflow report

## `[cheesy_kowalevski]`

Workflow execution completed successfully!

Run times
  13-Jun-2026 12:26:34 - 13-Jun-2026 12:28:04 (duration: 1m 30s)

23 succeeded
0 cached
0 ignored
0 failed (0 retries)

Nextflow command

      nextflow run /data/new-hansen/lep_amr/wf-amplicon-local-v1 -profile standard -resume --fastq /data/new-hansen/lep_amr/runs/20260613_122631_02b071fd/work/input_fastq --reference /data/new-hansen/lep_amr/runs/20260613_122631_02b071fd/work/screening/selected_amplicons.fasta --sample_sheet /data/new-hansen/lep_amr/runs/20260613_122631_02b071fd/work/sample_sheet.csv --out_dir /data/new-hansen/lep_amr/runs/20260613_122631_02b071fd/work/epi2me_output --reads_downsampling_size 0 --min_read_length 80 --drop_frac_longest_reads 0 --take_longest_remaining_reads false --min_coverage 20 --threads 4 --override_basecaller_cfg dna_r10.4.1_e8.2_400bps_hac@v4.2.0

CPU-Hours
  `(a few seconds)`
Launch directory
  `/data/new-hansen/lep_amr/runs/20260613_122631_02b071fd/work`
Work directory
  `/data/new-hansen/lep_amr/nextflow_work`
Project directory
  `/data/new-hansen/lep_amr/wf-amplicon-local-v1`
Script name
  `main.nf`
Script ID
  `087ada567e12d1198d6e5e7d7393878a`
Workflow name
  `epi2me-labs/wf-amplicon`
Workflow version
  `v1.2.2`
Workflow description
  Amplicon workflow
Workflow author
  Oxford Nanopore Technologies
Workflow home page
  https://github.com/epi2me-labs/wf-amplicon
Workflow session
  `b373c377-6159-4bdf-8582-356f9ca9db64`
Workflow profile
  standard
Workflow container
  `[withLabel:wf_common:ontresearch/wf-common:shafdd79f8e4a6faad77513c36f623693977b92b08e, withLabel:wfamplicon:ontresearch/wf-amplicon:sha0ba67476938520e6f132759780d0a0e902925c59, withLabel:medaka:ontresearch/medaka:shacf8338462607b17b1d68dbce212cb93daea50bad]`
Container engine
  `docker`
Nextflow version
  version 26.04.3, build 12259 (28-05-2026 08:48 UTC)

## Resource Usage

These plots give an overview of the distribution of resource usage for each process.

#### CPU

#### Memory

#### Job Duration

#### I/O

## Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

Values shown as:

(tasks table omitted because the dataset is too big)